PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g37890.1.p
Common NameBRADI_3g37890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 438aa    MW: 47202 Da    PI: 9.0792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g37890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-062749123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  Bradi3g37890.1.p 27 YVCEICNQGFQRDQNLQMHRRRH 49
                      9*********************9 PP

2zf-C2H211.80.00072107128223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  C+k +  +s++k H++t+
  Bradi3g37890.1.p 107 ACARCSKAYAVHSDYKAHLKTC 128
                       6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-52450No hitNo description
Gene3DG3DSA:3.30.160.601.8E-52649IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.972749IPR007087Zinc finger, C2H2
SMARTSM003550.00522749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
SMARTSM0035511070100IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-497127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230106133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58126160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAMANNADPD AEVVSLTPRT LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKREE  60
GEAAARKRVF VCPEPSCLHH DPAHALGDLV GIKKHFRRKH SGHRQWACAR CSKAYAVHSD  120
YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDMCDAGGRP PRGDTTSSSA GRGGGARAAS  180
ASTSHRQQQQ QLHAAAGASL SRTASSASPS SGADLVGSPV AWPAPSPTAH QHNLELQLMP  240
PRGTAGPIAR RASPPAAVIP KPDADANAMR LELSIGVRFG AGAREDSNSS SEAEDMAAAA  300
RALKGEAREQ LRLAAMEKAA ADETRAEARR HAELAEQELA GARRMREQAR AELGRAHAVR  360
DHAVRQLDAA LLEITCYGCR GKFRARAATM AAASYDVPSV VTEGEAGIGN GQQMALLQYD  420
AADDRLPRGR RAMMDMN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336800.0CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572281.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotQ9C9X71e-121IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0Q3FHB70.0A0A0Q3FHB7_BRADI; Uncharacterized protein
STRINGBRADI3G37890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.12e-96indeterminate(ID)-domain 16